Automated Curation and Harmonization of cBioPortal Clinical Metadata using Sentence Transformers
Abhilash Dhal
Omics data repositories often contain heterogeneous data from multiple studies and diverse sources. This lack of structure in the metadata is...
Visualize OncoKB annotation and patient report generation
Aishika Nandi
OncoKB™ is a crucial resource which provides comprehensive information about genomic alterations in cancer. However, despite the availability of APIs...
Improve navigatability of the HTAN data standards
Ankita Sahu
The goal of this project is to improve the navigability of the HTAN data standards in HTAN portal as well as in schema-visualization. To do this, we...
Add the ability to spawn code notebooks from cBioPortal queries
gautamsarawagi
This project aims to enhance cBioPortal functionality by allowing users to seamlessly launch code notebook environments like JupyterLite directly...
Integration of AlphaMissense Pathogenicity Predictions into Genome Nexus and cBioPortal
Ivy Zou
This project involves the integration of AlphaMissense, an innovative tool for predicting the pathogenicity of missense mutations, into two...
Extend Chart Types in Study View
mukayevolzhas
Extend the "Chart" functionality on the Study View Page by supporting additional types of charts such as line charts and area charts. Support chart...
Frontend visualization and incorporation of single cell data in cBioPortal
Suraj_Sharma
My project aims to bridge the gap between single-cell gene expression data analysis and existing cancer genomics workflows, particularly within the...
Chatbot trained on documentation site and conversations
Xinling Wang
The project aims to develop and integrate an AI chatbot into a main website, leveraging documentation and Google group conversations to provide...
Create pipeline/interface to prioritize variants for OncoKB curation
Yameng Ge
The cBioPortal organization is dedicated to assisting clinicians and researchers in the analysis of complex cancer genomics data. And cBioPortal...
