Refactor Multiphase Monte Carlo Sampling for volesti and dingo
Akis Schinas
The proposed project aims to refactor the Multiphase Monte Carlo Sampling (MMCS) algorithm, currently implemented in Python with Cython bindings, to...
Improving sampling routines for correlation matrices and R interface
Atrayee Samanta
The goal of this project is to (1) improve sampling routines for correlation matrices and (2) further enhance the R interface with sampling...
Machine Learning and Optimization for Finance: Index Replication
Ho Thi Minh Ha
Indexes are baskets of stocks with specific characteristic. They provide examples for diversification in investing to mitigate the volatility of...
Modernize Linear Program solver interface in dingo
Ke Shih
The proposed project aims to modernize the Linear Program (LP) solver interface in dingo, a Python package for analyzing metabolic net- works. By...
Develop a new rounding method for convex polytopes
Luca Perju
The goal of this project is to improve currently existing implementations for rounding convex polytopes from Volesti as well as develop a new method...
Pre- and post-sampling features to leverage flux sampling at both the strain and the community level
Sotiris Touliopoulos
The first genome-scale models of metabolism appeared in 1999 and 2000. In the following years fundamental Microbial Systems concepts were developed...
Efficient Volume Computation
Vladimir Necula
The current state-of-the-art algorithms for the volume computation of high dimensional convex bodies, such as the one currently used within the...