INCF
INCF is participating in GSoC 2025. View the ideas list and the contribution guide for this organization.
An open & FAIR neuroscience standards organization

Category

Science and medicine

Years

Technologies

pythonjavascriptjavac++gpuxmlccudajupytertensorflow

Topics

visualizationbig datadata sciencesimulationneurosciencesciencebio/neuro image processingbrain modelingbrain simulationbrain imagingbrain modellingdata visualizationneuroimage processingneuroimagingmachine learning
Past Projects
Implementation of SWC to NeuroML converter in PyNeuroML
Aditya18
I am proposing a project for Google Summer of Code to develop an interactive SWC to NeuroML converter in Python. The converter will simplify the...
Developmental Graph Neural Networks (D-GNNs) and Visualizations
Pakhi Banchalia
DevoGraph is an open-source GNN framework designed specifically for analyzing embryogenetic data. It utilizes Graph Neural Networks (GNNs) as a...
Improving and Extending the User Interface of the Neuroptimus Parameter Optimization Software Tool
Eslam Khaled Korany
Neuroptimus, an open-source parameter optimization software tailored for neuroscience applications, has been instrumental in advancing the...
Project 15.1 Analysim, INCF- implementing new features in project dashboard and notebook management.
Uday Biswas
Project Deliverables • Implement a Project edit button, file and project rename functionality, fix edit project popup , allow editing list of...
Visualization and UI update for ASP/IJ
Rikas Ilamdeen
The Active Segmentation Platform for ImageJ (ASP/IJ) aims to provide a general-purpose workbench that allows biologists and other domain experts to...
Implement batch simulation and optimization routines
Abdul Samad Siddiqui
The Human Neocortical Neurosolver (HNN) is a computational tool that enables scientists to study brain responses at the cellular and circuit levels....
Using markerless motion capture to drive music generation
Louis Martinez
Gesture-based music generation has existed for some years now, thanks to software such as Wekinator. However, they use machine learning methods that...
(Project Idea - 18.2)Improve-Brian's-markdown-exporter
Sparsh_Agrawal
This proposal aims to improve the capability of markdown exporter package inorder to cover multicompartment model, and also to support generation of...
Package Brian's unit system
Sorin Birchi
The project aims to refactor the Brain's unit system into a standalone package. Additionally, it aims to incorporate additional functionalities from...
21.1 HarmonyHub: A Web-Based Platform for Learning Variable-Pitch Musical Instruments
Keerthi Reddy Kambham
This project aims to build HarmonyHub, a web platform for personalized and engaging learning experiences with variable-pitch instruments like wind...
A natural language interface for querying federated research data
Raya Chakravarty
Neurobagel is a federated data ecosystem that allows researchers and other data users to find and consume research data that has to remain at their...
A Social web tool to facilitate rating and commenting on research reports
armaanalam
SciCommons aims to revolutionize academic publishing by providing an open peer review platform. The current system faces challenges such as time...
INCF GSoC 2024 Project 8.2 Proposal
Jsprouse
We aim to further enhance model development with NetPyNE’s “batch” subpackage by refactoring the code base for ease of use and scalability, then use...
14.1 INCF Impact Visualization Portal with ML and Data Analytics (175 h)
SuGa_XD
The proposal focuses on prospective ideas that can be employed for enhancement of the existing INCF Impact Visualization Portal. It goes into depth,...
HyperDevoGraph: Modeling C. elegans Development with Hypergraph Convolution Techniques
Mehul Arora
This project studies the development of a tiny worm called Caenorhabditis elegans, focusing on how its cells grow and interact from its early stages....
Open Source Community Sustainability
Sarrah Bastawala
The ‘Open Source Community Sustainability’ project is about simulating open-source community interactions to encourage conditions leading to...
1.1 - Enhancing tvb-widgets by developing new widgets
Priyaa
TheVirtualBrain (TVB) is the first integrative neuroinformatics platform for the modeling of full brain network dynamics. TVB simulator, written in...
Scicommons: A social-web tool to facilitate rating and commenting on research reports
Dinakar
The proposal aims to address the issue of the expensive and inaccessible research publishing industry by leveraging modern internet-based social...
LORIS Data Platform Web Modules and API Development
Nada Ahmed Elmasry
The project aims to enhance the LORIS web platform, a widely used tool in neuroimaging research with databases utilized by research teams in 22...
Contribute to LORIS
Ayush Bhardwaj
The proposal involves contributing to the LORIS codebase, a pivotal resource for neuroscience research. LORIS plays a crucial role in facilitating...
17.1 Semi-Automated Workflows for Physiological Signals
Georgios Kikas
This project entails the upgrade of the existing physiopy packages, peakdet and phys2denoise, for optimized interoperability and the development of...
Incorporate new features into an advanced, cross-platform 3D viewer for NeuroML cells and networks
Giannis D
The project is about incorporating new features into an existing 3D viewer which allows for visualisation of cells and networks using the NeuroML...
8.1 Automated In-Silico Representation of Published Literature
Zequan Liu
Project synopsis / summary: This project is dedicated to developing a set of automated tools and processes for extracting useful neuronal...
Efficient app-based measurement of visual functions in infants and young children
Dhruvanshu Joshi
Ensuring healthy vision in infants requires early detection of potential problems. Current Infant Visual Function Measurement Systems built in...
Integration of inference based models to Neuroptimus
Tamogh Nekkanti
With the advent of machine learning, statistical learning and modelling becoming more prevalent in today’s world, we can estimate values for an...
Best of both worlds – let’s cherish the features of parametric AND explicit knowledge retrieval
Barbara Strasser
The annotation of research data is essential to ensure its findability and reusability. High-quality data annotations require domain expertise, so...
LLM-assisted tool to annotate research data with machine-understandable, semantic data dictionaries
Tvisha Vedant.
To participate in the Neurobagel query federation, datasets must conform to Neurobagel’s data model, so annotating the datasets is necessary to...